PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024102-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 685aa    MW: 74870.9 Da    PI: 6.6774
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024102-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30409467259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  NNU_024102-RA 409 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRSILITTYEGNHNHP 467
                    7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33393469IPR003657WRKY domain
SuperFamilySSF1182908.76E-28401469IPR003657WRKY domain
PROSITE profilePS5081129.792403469IPR003657WRKY domain
SMARTSM007743.2E-37408468IPR003657WRKY domain
PfamPF031066.7E-27410467IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MELVGIQHRR GGFLKRPEYS TGESCSGRVE LRFTSRCNVS VGREEKRRER IAAGLRCSLV  60
SDDREREEEN SGRKRWNEKG GGGLTIDSSE IGFFVTKPTA IKSFLTTNHP KWKHDPMDFP  120
VNLNCRDDQD SPVPSDEKRV DEMDFFSDKN RLKDFDAKAS IIDVKKEDSH GGVAPRLDLA  180
VNTGLHLLTA NTGSDQSTVD DGISPNADDK RAKSELAALQ TELDRMNEEN QRLRAMLSQV  240
TNNYSALQMH LVTLMQQQNR KAESAQDQEM LDGKLEEKKH EAGEGLIVPR QFMDLGPAAT  300
AETDEPSQSS SEGRSRDHSG SPHNNAEVVS KEYRQQKNSS NNEIVLFDQD KSDFGEDRGI  360
GREESPDQGW VANKIPKLNP SKNVDQTTEA TMRKARVSVR ARSEAPMITD GCQWRKYGQK  420
MAKGNPCPRA YYRCTMAAGC PVRKQVQRCA EDRSILITTY EGNHNHPLPP AAMAMASTTS  480
AAASMLLSGS MSSTDGLLNS NFLARTLLPC SSSMATISAS APFPTVTLDL THTPNPLQFQ  540
RPPSQFHVPF PNQAQSFPSQ PAPPLTQVFG QALYNQTKFS GLQLSQDVEP SQFVHQSPAP  600
APHQAQQPSL ADTVSAATAA ITADPNFTAA LAAAITSIIG GARPTNNSSS NDNNNNSSNN  660
NGNTTTTSNS NGNNNKISNS TFPGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22395471176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244474.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9C5191e-148WRKY6_ARATH; WRKY transcription factor 6
TrEMBLF6HIC70.0F6HIC7_VITVI; Putative uncharacterized protein
STRINGVIT_12s0059g00880.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-122WRKY family protein